Strain ID | Collection ID | Phylum | Class | Order | Family | Host | Environment | Assemblies | ORFs AA | ORFs NT | GFFs |
---|---|---|---|---|---|---|---|---|---|---|---|
LjRoot3 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Hyphomicrobiaceae | Lotus japonicus | Root | LjRoot3.fna.gz | LjRoot3.faa.gz | LjRoot3.ffn.gz | LjRoot3.gff.gz |
LjRoot4 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Bradyrhizobiaceae | Lotus japonicus | Root | LjRoot4.fna.gz | LjRoot4.faa.gz | LjRoot4.ffn.gz | LjRoot4.gff.gz |
LjRoot5 | LjSPHERE | Firmicutes | Bacilli | Bacillales | Bacillaceae | Lotus japonicus | Root | LjRoot5.fna.gz | LjRoot5.faa.gz | LjRoot5.ffn.gz | LjRoot5.gff.gz |
LjRoot6 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Lotus japonicus | Root | LjRoot6.fna.gz | LjRoot6.faa.gz | LjRoot6.ffn.gz | LjRoot6.gff.gz |
LjRoot7 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Phyllobacteriaceae | Lotus japonicus | Root | LjRoot7.fna.gz | LjRoot7.faa.gz | LjRoot7.ffn.gz | LjRoot7.gff.gz |
LjRoot9 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Bradyrhizobiaceae | Lotus japonicus | Root | LjRoot9.fna.gz | LjRoot9.faa.gz | LjRoot9.ffn.gz | LjRoot9.gff.gz |
Root100 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Phyllobacteriaceae | Arabidopsis thaliana | Root | Root100.fna.gz | Root100.faa.gz | Root100.ffn.gz | Root100.gff.gz |
Root101 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Intrasporangiaceae | Arabidopsis thaliana | Root | Root101.fna.gz | Root101.faa.gz | Root101.ffn.gz | Root101.gff.gz |
Root102 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Phyllobacteriaceae | Arabidopsis thaliana | Root | Root102.fna.gz | Root102.faa.gz | Root102.ffn.gz | Root102.gff.gz |
Root105 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Hyphomicrobiaceae | Arabidopsis thaliana | Root | Root105.fna.gz | Root105.faa.gz | Root105.ffn.gz | Root105.gff.gz |
Root107 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Streptomycetaceae | Arabidopsis thaliana | Root | Root107.fna.gz | Root107.faa.gz | Root107.ffn.gz | Root107.gff.gz |
Root122 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Nocardioidaceae | Arabidopsis thaliana | Root | Root122.fna.gz | Root122.faa.gz | Root122.ffn.gz | Root122.gff.gz |
Root127 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root127.fna.gz | Root127.faa.gz | Root127.ffn.gz | Root127.gff.gz |
Root131 | AtSPHERE | Firmicutes | Bacilli | Bacillales | Bacillaceae | Arabidopsis thaliana | Root | Root131.fna.gz | Root131.faa.gz | Root131.ffn.gz | Root131.gff.gz |
Root133 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Oxalobacteraceae | Arabidopsis thaliana | Root | Root133.fna.gz | Root133.faa.gz | Root133.ffn.gz | Root133.gff.gz |
Root135 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Mycobacteriaceae | Arabidopsis thaliana | Root | Root135.fna.gz | Root135.faa.gz | Root135.ffn.gz | Root135.gff.gz |
Root136 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Nocardiaceae | Arabidopsis thaliana | Root | Root136.fna.gz | Root136.faa.gz | Root136.ffn.gz | Root136.gff.gz |
Root137 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Cellulomonadaceae | Arabidopsis thaliana | Root | Root137.fna.gz | Root137.faa.gz | Root137.ffn.gz | Root137.gff.gz |
Root140 | AtSPHERE | Actinobacteria | Actinobacteria | Actinomycetales | Nocardioidaceae | Arabidopsis thaliana | Root | Root140.fna.gz | Root140.faa.gz | Root140.ffn.gz | Root140.gff.gz |
Root142 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root142.fna.gz | Root142.faa.gz | Root142.ffn.gz | Root142.gff.gz |