Strain ID | Collection ID | Phylum | Class | Order | Family | Host | Environment | Assemblies | ORFs AA | ORFs NT | GFFs |
---|---|---|---|---|---|---|---|---|---|---|---|
LjRoot62 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot62.fna.gz | LjRoot62.faa.gz | LjRoot62.ffn.gz | LjRoot62.gff.gz |
LjRoot63 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | Lotus japonicus | Root | LjRoot63.fna.gz | LjRoot63.faa.gz | LjRoot63.ffn.gz | LjRoot63.gff.gz |
LjRoot65 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot65.fna.gz | LjRoot65.faa.gz | LjRoot65.ffn.gz | LjRoot65.gff.gz |
LjRoot66 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot66.fna.gz | LjRoot66.faa.gz | LjRoot66.ffn.gz | LjRoot66.gff.gz |
LjRoot67 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot67.fna.gz | LjRoot67.faa.gz | LjRoot67.ffn.gz | LjRoot67.gff.gz |
LjRoot68 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | Lotus japonicus | Root | LjRoot68.fna.gz | LjRoot68.faa.gz | LjRoot68.ffn.gz | LjRoot68.gff.gz |
LjRoot69 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot69.fna.gz | LjRoot69.faa.gz | LjRoot69.ffn.gz | LjRoot69.gff.gz |
LjRoot70 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Oxalobacteraceae | Lotus japonicus | Root | LjRoot70.fna.gz | LjRoot70.faa.gz | LjRoot70.ffn.gz | LjRoot70.gff.gz |
LjRoot71 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Lotus japonicus | Root | LjRoot71.fna.gz | LjRoot71.faa.gz | LjRoot71.ffn.gz | LjRoot71.gff.gz |
LjRoot72 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot72.fna.gz | LjRoot72.faa.gz | LjRoot72.ffn.gz | LjRoot72.gff.gz |
LjRoot73 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | Lotus japonicus | Root | LjRoot73.fna.gz | LjRoot73.faa.gz | LjRoot73.ffn.gz | LjRoot73.gff.gz |
LjRoot74 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot74.fna.gz | LjRoot74.faa.gz | LjRoot74.ffn.gz | LjRoot74.gff.gz |
LjRoot75 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot75.fna.gz | LjRoot75.faa.gz | LjRoot75.ffn.gz | LjRoot75.gff.gz |
LjRoot76 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot76.fna.gz | LjRoot76.faa.gz | LjRoot76.ffn.gz | LjRoot76.gff.gz |
LjRoot77 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Xanthomonadales | Xanthomonadaceae | Lotus japonicus | Root | LjRoot77.fna.gz | LjRoot77.faa.gz | LjRoot77.ffn.gz | LjRoot77.gff.gz |
LjRoot79 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot79.fna.gz | LjRoot79.faa.gz | LjRoot79.ffn.gz | LjRoot79.gff.gz |
LjRoot83 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot83.fna.gz | LjRoot83.faa.gz | LjRoot83.ffn.gz | LjRoot83.gff.gz |
LjRoot84 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot84.fna.gz | LjRoot84.faa.gz | LjRoot84.ffn.gz | LjRoot84.gff.gz |
LjRoot85 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot85.fna.gz | LjRoot85.faa.gz | LjRoot85.ffn.gz | LjRoot85.gff.gz |
LjRoot86 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot86.fna.gz | LjRoot86.faa.gz | LjRoot86.ffn.gz | LjRoot86.gff.gz |
LjRoot87 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot87.fna.gz | LjRoot87.faa.gz | LjRoot87.ffn.gz | LjRoot87.gff.gz |
LjRoot88 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot88.fna.gz | LjRoot88.faa.gz | LjRoot88.ffn.gz | LjRoot88.gff.gz |
LjRoot90 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Bradyrhizobiaceae | Lotus japonicus | Root | LjRoot90.fna.gz | LjRoot90.faa.gz | LjRoot90.ffn.gz | LjRoot90.gff.gz |
LjRoot91 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Oxalobacteraceae | Lotus japonicus | Root | LjRoot91.fna.gz | LjRoot91.faa.gz | LjRoot91.ffn.gz | LjRoot91.gff.gz |
LjRoot92 | LjSPHERE | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Lotus japonicus | Root | LjRoot92.fna.gz | LjRoot92.faa.gz | LjRoot92.ffn.gz | LjRoot92.gff.gz |
LjRoot93 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot93.fna.gz | LjRoot93.faa.gz | LjRoot93.ffn.gz | LjRoot93.gff.gz |
LjRoot94 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot94.fna.gz | LjRoot94.faa.gz | LjRoot94.ffn.gz | LjRoot94.gff.gz |
LjRoot95 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot95.fna.gz | LjRoot95.faa.gz | LjRoot95.ffn.gz | LjRoot95.gff.gz |
LjRoot96 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot96.fna.gz | LjRoot96.faa.gz | LjRoot96.ffn.gz | LjRoot96.gff.gz |
LjRoot97 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Lotus japonicus | Root | LjRoot97.fna.gz | LjRoot97.faa.gz | LjRoot97.ffn.gz | LjRoot97.gff.gz |
LjRoot98 | LjSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Lotus japonicus | Root | LjRoot98.fna.gz | LjRoot98.faa.gz | LjRoot98.ffn.gz | LjRoot98.gff.gz |
LjRoot99 | LjSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Lotus japonicus | Root | LjRoot99.fna.gz | LjRoot99.faa.gz | LjRoot99.ffn.gz | LjRoot99.gff.gz |
Root1203 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1203.fna.gz | Root1203.faa.gz | Root1203.ffn.gz | Root1203.gff.gz |
Root1204 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1204.fna.gz | Root1204.faa.gz | Root1204.ffn.gz | Root1204.gff.gz |
Root1212 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1212.fna.gz | Root1212.faa.gz | Root1212.ffn.gz | Root1212.gff.gz |
Root1217 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Arabidopsis thaliana | Root | Root1217.fna.gz | Root1217.faa.gz | Root1217.ffn.gz | Root1217.gff.gz |
Root1220 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1220.fna.gz | Root1220.faa.gz | Root1220.ffn.gz | Root1220.gff.gz |
Root1221 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Arabidopsis thaliana | Root | Root1221.fna.gz | Root1221.faa.gz | Root1221.ffn.gz | Root1221.gff.gz |
Root1237 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Arabidopsis thaliana | Root | Root1237.fna.gz | Root1237.faa.gz | Root1237.ffn.gz | Root1237.gff.gz |
Root1238 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Arabidopsis thaliana | Root | Root1238.fna.gz | Root1238.faa.gz | Root1238.ffn.gz | Root1238.gff.gz |
Root1240 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1240.fna.gz | Root1240.faa.gz | Root1240.ffn.gz | Root1240.gff.gz |
Root1252 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1252.fna.gz | Root1252.faa.gz | Root1252.ffn.gz | Root1252.gff.gz |
Root1272 | AtSPHERE | Proteobacteria | Betaproteobacteria | Burkholderiales | Comamonadaceae | Arabidopsis thaliana | Root | Root1272.fna.gz | Root1272.faa.gz | Root1272.ffn.gz | Root1272.gff.gz |
Root1277 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Arabidopsis thaliana | Root | Root1277.fna.gz | Root1277.faa.gz | Root1277.ffn.gz | Root1277.gff.gz |
Root1279 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Arabidopsis thaliana | Root | Root1279.fna.gz | Root1279.faa.gz | Root1279.ffn.gz | Root1279.gff.gz |
Root1280 | AtSPHERE | Proteobacteria | Gammaproteobacteria | Pseudomonadales | Moraxellaceae | Arabidopsis thaliana | Root | Root1280.fna.gz | Root1280.faa.gz | Root1280.ffn.gz | Root1280.gff.gz |
Root1290 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Caulobacterales | Caulobacteraceae | Arabidopsis thaliana | Root | Root1290.fna.gz | Root1290.faa.gz | Root1290.ffn.gz | Root1290.gff.gz |
Root1294 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Arabidopsis thaliana | Root | Root1294.fna.gz | Root1294.faa.gz | Root1294.ffn.gz | Root1294.gff.gz |
Root1298 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1298.fna.gz | Root1298.faa.gz | Root1298.ffn.gz | Root1298.gff.gz |
Root1312 | AtSPHERE | Proteobacteria | Alphaproteobacteria | Rhizobiales | Rhizobiaceae | Arabidopsis thaliana | Root | Root1312.fna.gz | Root1312.faa.gz | Root1312.ffn.gz | Root1312.gff.gz |